Exploring the folding landscape of a structured RNA

Rick Russell;小威 庄;Hazen P. Babcock;Ian S. Millett;Sebastian Doniach;棣文 朱;Daniel Herschlag

Stanford University

发表时间:2002-1-8

期 刊:Proceedings of the National Academy of Sciences of the United States of America

语 言:English

U R L: http://www.scopus.com/inward/record.url?scp=0037039464&partnerID=8YFLogxK

摘要

Structured RNAs achieve their active states by traversing complex, multidimensional energetic landscapes. Here we probe the folding landscape of the Tetrahymena ribozyme by using a powerful approach: The folding of single ribozyme molecules is followed beginning from distinct regions of the folding landscape. The experiments, combined with small-angle x-ray scattering results, show that the landscape contains discrete folding pathways. These pathways are separated by large free-energy barriers that prevent interconversion between them, indicating that the pathways lie in deep channels in the folding landscape. Chemical protection and mutagenesis experiments are then used to elucidate the structural features that determine which folding pathway is followed. Strikingly, a specific long-range tertiary contact can either help folding or hinder folding, depending on when it is formed during the process. Together these results provide an unprecedented view of the topology of an RNA folding landscape and the RNA structural features that underlie this multidimensional landscape.

被引量

期刊度量

Scopus度量

年份 CiteScore SJR SNIP
1996
1997
1998
1999 8.52 2.398
2000 7.927 2.452
2001 7.189 2.458
2002 7.281 2.498
2003 7.129 2.507
2004 7.197 2.617
2005 6.94 2.546
2006 6.849 2.45
2007 6.867 2.46
2008 7.034 2.431
2009 7.025 2.563
2010 6.898 2.541
2011 16.8 6.864 2.642
2012 17.3 6.868 2.679
2013 17.4 7.073 2.731
2014 17.2 6.898 2.702
2015 17.8 6.814 2.677
2016 18 6.576 2.662
2017 17.1 6.092 2.675
2018 16.1 5.601 2.619
2019 15.7 5.165 2.695
2020 16.2 5.011 2.904
2021 14.4

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