A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

Gane Ka Shu Wong;Bin Liu;军王;Yong Zhang;Xu Yang;Zengjin Zhang;Qingshun Meng;Jun Zhou;Dawei Li;Jingjing Zhang;Peixiang Ni;Songgang Li;Longhua Ran;Heng Li;Jianguo Zhang;Ruiqiang Li;Shengting Li;Hongkun Zheng;Wei Lin;Guangyuan Li;Xiaoling Wang;Wenming Zhao;Jun Li;Chen Ye;Mingtao Dai;Jue Ruan;Yan Zhou;Yuanzhe Li;Ximiao He;Yunze Zhang;Jing Wang;Xiangang Huang;Wei Tong;Jie Chen;Jia Ye;Chen Chen;Ning Wei;Guoqing Li;Le Dong;Fengdi Lan;Yongqiao Sun;Zhenpeng Zhang;Zheng Yang;Yingpu Yu;Yanqing Huang;Dandan He;Yan Xi;Dong Wei;Qiuhui Qi;Wenjie Li;Jianping Shi;Miaoheng Wang;Fei Xie;Jianjun Wang;Xiaowei Zhang;Pei Wang;Yiqiang Zhao;宁李;宁杨;Wei Dong;松年胡;长青曾;Weimou Zheng;Bailin Hao;La Deana W. Hillier;Shiaw Pyng Yang;Wesley C. Warren;Richard K. Wilson;Mikael Brandström;Hans Ellegren;Richard P.M.A. Crooijmans;Jan J. van der Poel;Henk Bovenhuis;Martien A.M. Groenen;Ivan Ovcharenko;Laurie Gordon;Lisa Stubbs;Susan Lucas;Tijana Glavina;Andrea Aerts;Pete Kaiser;Lisa Rothwell;John R. Young;Sally Rogers;Brian A. Walker;Andy van Hateren;Jim Kaufman;Nat Bumstead;Susan J. Lamont;Huaijun Zhou;Paul M. Hocking;David Morrice;Dirk Jan de Koning;Andy Law;Neil Bartley;David W. Burt;Henry Hunt;Hans H. Cheng;Ulrika Gunnarsson;Per Wahlberg;Leif Andersson;Ellen Kindlund;Martti T. Tammi;Björn Andersson;Caleb Webber;Chris P. Ponting;Ian M. Overton;Paul E. Boardman;Haizhou Tang;Simon J. Hubbard;Stuart A. Wilson;俊余;Jian Wang;焕明杨

CAS - Beijing Institute of Genomics;Zhejiang University;University of Washington;China Association for Science and Technology;Peking University;Beijing North Computation Center;CAS - Institute of Theoretical Physics;China Agricultural University;Washington University St. Louis;Uppsala University;Wageningen University & Research;Lawrence Livermore National Laboratory;United States Department of Energy;Pirbright Institute;Iowa State University;University of Edinburgh;United States Department of Agriculture;Swedish University of Agricultural Sciences;Karolinska Institutet;National University of Singapore;University of Oxford;University of Manchester;University of Sheffield

发表时间：2004-12-9

期刊：Nature

语言：English

摘要

We describe a genetic variation map for the chicken genome containing 2.8 miilion single-nucleotide polymorphisms (SNPs). This map is based on a comparison of the sequences of three domestic chicken breeds (a broiler, a layer and a Chinese silkie) with that of their wild ancestor, red jungle fowl. Subsequent experiments indicate that at least 90% of the variant sites are true SNPs, and at test 70% are common SNPs that segregate in many domestic breeds. Mean nucleotide diversity is about five SNPs per kilobase for almost every possible comparison between red jungle fowl and domestic lines, between two different domestic lines, and within domestic lines-in contrast to the notion that domestic animals are highly inbred relative to their wild ancestors. In fact, most of the SNPs originated before domestication, and there is little evidence of selective sweeps for adaptive alleles on length scales greater than 100 kilobases.

期刊度量

Scopus度量

年份	CiteScore	SJR	SNIP
1996
1997
1998
1999		15.599	7.183
2000		11.917	6.845
2001		9.874	6.735
2002		10.114	7.208
2003		11.384	7.504
2004		11.222	7.523
2005		10.333	7.199
2006		9.702	7.156
2007		10.344	7.097
2008		13.17	7.321
2009		15.185	8.2
2010		16.465	8.23
2011	53.1	17.598	8.652
2012	51	17.546	8.409
2013	50.9	19.69	8.482
2014	49.9	18.78	7.946
2015	51.6	19.669	8.052
2016	49.2	18.389	7.901
2017	53.7	17.875	8.647
2018	55.7	16.345	9.448
2019	51	14.047	8.82
2020	55.9
2021

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

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