Molecular targeting of inhibitor of apoptosis proteins based on small molecule mimics of natural binding partners

Rachael A. Kipp;Martin A. Case;Aislyn D. Wist;Catherine M. Cresson;Maria Carrell;Erin Griner;Arun Wiita;Philip A. Albiniak;继杰 柴;一公 施;Martin F. Semmelhack;George L. McLendon

Princeton University;China Association for Science and Technology

发表时间:2002-6-11

期 刊:Biochemistry

语 言:English

U R L: http://www.scopus.com/inward/record.url?scp=0037062585&partnerID=8YFLogxK

摘要

An assay based on a solvent-sensitive fluorogenic dye molecule, badan, is used to test the binding affinity of a library of tetrapeptide molecules for the BIR3 (baculovirus IAP repeat) domain of XIAP (X-linked inhibitor of apoptosis protein). The fluorophore is attached to a tetrapeptide, Ala-ValPro-Cys-NH2, through a thiol linkage and, upon binding to XIAP, undergoes a solvatochromic shift in fluorescence emission. When a molecule (e.g., a natural protein known to bind to XIAP or a tetrapeptide mimic) displaces the dye, the emission shifts back to the spectrum observed in water. As emission intensity is related to the binding of the tetrapeptide, the intensity can be used to determine the equilibrium constant, K, for the displacement of the dye by the tetrapeptide. The results permit residue-specific analysis of the interaction. Furthermore, we show that hydrophobic effects in the fourth position are general and can effectively increase overall affinity.

相关科学

生物化学、遗传学和分子生物学
生物化学

被引量

期刊度量

Scopus度量

年份 CiteScore SJR SNIP
1996
1997
1998
1999 3.519 1.296
2000 2.991 1.2
2001 2.803 1.159
2002 2.601 1.177
2003 2.607 1.135
2004 2.686 1.175
2005 2.516 1.089
2006 2.521 1.028
2007 2.441 0.972
2008 2.489 0.993
2009 2.327 0.985
2010 2.143 0.962
2011 6 2.187 1.002
2012 6.2 2.076 1.001
2013 6.1 2.154 0.977
2014 5.8 1.816 0.929
2015 5.8 1.727 0.898
2016 5.5 1.737 0.851
2017 5.4 1.685 0.868
2018 5.2 1.556 0.847
2019 5.3 1.464 0.811
2020 5.5 1.43 0.803
2021 5.3

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