The brown planthopper (BPH), Nilaparvata lugens Stål, is one of the major pests of rice. It uses its stylet to penetrate rice phloem, feeding on rice sap and causing direct damage to rice or even plant death. During the feeding process, BPHs secrete saliva into plant tissues, which plays crucial roles in the plant-insect interactions. However, little is known about how the salivary proteins secreted by BPH affect feeding ability and how they induce plant immune responses. Here, we identified an N. lugens Salivary Protein 1 (NlSP1) by screening salivary proteome and characterized its functions in BPH and plants. NlSP1 induces cell death, H₂O₂ accumulation, the expression of defense-related genes, and callose deposition in planta. The active region of NlSP1 that induces plant cell death is located in its N-terminal region. Inhibition of NlSP1 expression in BPHs reduced their feeding ability and had a lethal effect on them. Most importantly, we demonstrated that NlSP1 was able to be secreted into rice plant during feeding process and form a complex with certain interacting partner of rice. These results provide a detailed characterization of a salivary protein from BPHs and offers new insights into our understanding of rice-BPH interaction.

Jin Huang;Ning Zhang;Junhan Shan;Yaxin Peng;Jianping Guo;Cong Zhou;Shaojie Shi;Xiaohong Zheng;Di Wu;Wei Guan;Ke Yang;Bo Du;Lili Zhu;隆平 袁;Guangcun He;荣智 陈

Frontiers in Plant Science

2020-8-27

AnnongS-1, a thermo-sensitive genic male-sterile (TGMS) rice line, has a new TGMS gene. Genetic analysis indicated that the sterility of AnnongS-1 was controlled by a single resessive gene named tms5. In our previous studies based on an F₂ population from the cross between AnnongS-1 and Nanjing11, tms5 was mapped on chromosome 2. Recently, a RIL (recombinant inbred line) population from the same cross was developed and used for the fine mapping of the tms5 gene. Molecular marker techniques combined with BSA (bulked segregant analysis) were used. As a result, two AFLP markers (AF10, AF8), one RAPD marker (RA4), one STS marker (C365-1), one CAPs marker (G227-1) and four SSR markers (RM279, RM492, RM327, RM324) were found to be closely linked to tms5 gene. The DNA sequences of the RFLP marker of C365 and G227 were found in GenBank, and on the basis of these sequences, many primers were designed to amplify the two parents and their RIL population plants. Finally, the tms5 gene was mapped between STS marker C365-1 and CAPs marker G227-1 at a distance of 1.04 cM from C365-1 and 2.08 cM from G227-1.

Y. G. Wang;Q. H. Xing;Q. Y. Deng;F. S. Liang;隆平 袁;M. L. Weng;B. Wang

Theoretical And Applied Genetics

2003-9-1

Genetic diversity within parental lines of hybrid rice is the foundation of heterosis utilization and yield improvement. Previous studies have suggested that genetic diversity was narrow in cytoplasmic male sterile (CMS/A line) and restorer lines (R line) for Three-line hybrid rice. However, the genetic diversity within maintainer lines (B line), especially at a genome-wide scale, remains largely unknown. In the present study, we performed deep re-sequencing of the elite maintainer line V20B (Oryza sativa L. ssp. indica). We then compared the V20B sequence with the 93-11 (Oryza sativa L. ssp. indica) genome sequence. 112.1 × 106 paired-end reads (PE reads) were generated with approximately 30-fold sequencing depth. The V20B PE reads uniquely covered 87.6 % of the 93-11 genome sequence. Overall, a total of 660,778 single-nucleotide polymorphism (SNPs) and 266,301 insertions and deletions (InDels) were identified, yielding an average of 2.1 SNPs/kb and 0.8 InDels/kb. Genome-wide distribution of the SNPs and InDels was non-random, and variation-rich and variation-poor regions were identified in all chromosomes. A total of 20,562 non-synonymous SNPs spanning 8,854 genes were annotated. Our results identified DNA polymorphisms at the genome-wide scale and uncovered the high level of genetic diversity between V20B and 93-11. Our results proved that next-generation sequencing technologies can be powerful tools to study genome-wide DNA polymorphisms, to query genetic diversity, and to enable molecular improvement efforts with Three-line hybrid rice. Further, our results also indicated that 93-11 could be used as core germplasm for the improvement of wild-abortive CMS lines and the maintainer lines.

Yuanyi Hu;Bigang Mao;Yan Peng;Yidan Sun;Yinlin Pan;Yumei Xia;Xiabing Sheng;Yaokui Li;Li Tang;隆平 袁;Bingran Zhao

Molecular Genetics and Genomics

2014-6

The Pi-ta gene deployed in southern U.S. rice germplasm is effective in preventing the infection by strains of Magnaporthe oryzae isolates that carry the avirulence (AVR) gene AVR-Pita1. In the present study, 169 isolates from rice (Oryza sativa) cultivars, with and without Pi-ta, were analyzed for their genetic identity using an international differential system, repetitive element-based polymerase chain reaction (Rep- PCR), and sequence analysis of PCR products of AVR-Pita1. These isolates belong to the races IA1, IB1, IB17, IC1, and IC17 of M. oryzae. These isolates were further classified into 15 distinct groups by Rep-PCR. There was a predominant group within each race. Pathogenicity assays on 'Katy' (Pi-ta) and 'M202' (pi-ta) rice determined that IC1 was virulent to Katy and M202; IB17, IC17, and most of IA1 and IB1were avirulent to Katy and virulent to M202, suggesting that the Pi-ta gene in Katy is responsible for preventing infection by these isolates. Consistently, AVR-Pita1 was not amplified from 28 virulent isolates. One AVR-Pita1 allele was amplified by AVR-Pita1-specific primers in 78 avirulent isolates. Interestingly, different AVR-Pita1 alleles were found in each of the 12 avirulent isolates, as determined by DNA sequencing. Sequence analysis of 90 PCR products revealed 10 AVR-Pita1 haplotypes, 4 of which were new. In total, 12 amino acid changes were identified in the new variants when compared with the first described AVR-Pita sequence (AF207841). The finding of isolates with altered AVR-Pita1 from rice cultivars with and without Pi-ta suggests that these virulent isolates were adapted to the field environments in the southern United States. Further research will be needed to verify this prediction.

Junjie Xing;Yulin Jia;James C. Correll;Fleet N. Lee;Richard Cartwright;Mengliang Cao;隆平 袁

Plant Disease

2013

隆平 袁

ASM Science Journal

2011

隆平 袁

Crop Journal

2017-4-1

The new cytoplasmic male sterile (CMS) line Yewei A and its maintainer line Yewei B, with better agronomic characteristics, have been developed from a mutant of V20B (a rice maintainer line) through transformation of genomic DNA of wild rice (Oryza minuta J. S. Presl. ex C. B. Presl.). Analysis of molecular markers, DNA sequences, and Southern blot revealed that high DNA polymorphism exists between the mutant and its receptor, indicating that the special DNA fragment from O. minuta may be integrated into the genome of Yewei B. Therefore, transformation of genomic DNA from distant relatives to the plant of a target receptor may open an avenue for creating a new rice germplasm.

Bing Ran Zhao;Quan Hua Xing;Hong Ai Xia;He Hua Yang;De Min Jin;Xia Liu;Song Wen Wang;Bin Wang;隆平 袁

Journal of Integrative Plant Biology

2005-12

Quantitative trait loci (QTL) play important roles in controlling rice blast disease. In the present study, 10 field isolates of the races IA1, IB1, IB17, and IC1 of US rice blast fungus Magnaporthe oryzae collected in 1996 and 2009 were used to identify blast resistance QTL with a recombinant inbred line (RIL) population consisting of 227 F₇ individuals derived from the cross of rice (Oryza sativa L.) cultivars Lemont and Jasmine 85. Jasmine 85 is an indica cultivar that is moderately resistant, and Lemont is a tropical japonica cultivar susceptible to rice blast in greenhouse inoculation. Disease reactions of the parents and RILs were evaluated under greenhouse conditions. A total of six resistance QTL, qBLR8, qBLR10-1, qBLR10-2, qBLR10-3, qBLR12-1, and qBLR12-2, were identified on chromosomes 8, 10, and 12, respectively. Phenotypic variation, conditioned by these six resistance QTL, ranged from 5.37 to 39.18%. Among them, qBLR12-1 and qBLR12-2 provided the strongest resistance to the newest isolates of the most virulent race IA1 of M. oryzae. Three of these resistance QTL have been identified using different blast isolates in a previous study. qBLR10-1, qBLR10-2, and qBLR10-3 have not been previously found in this cross. These confirmed and new resistance QTL will be useful for the development of rice cultivars with improved effective resistance to rice blast via a markerassisted selection (MAS) approach.

Junjie Xing;Melissa H. Jia;James C. Correll;隆平 袁;Huangfeng Deng;Yulin Jia

Crop Science

2015-10-1

隆平 袁

Rice Science

2014-1

This paper summarizes results from a decade of collaborative research using advanced backcross (AB) populations to a) identify quantitative trait loci (QTL) associated with improved performance in rice and to b) clone genes underlying key QTLs of interest. We demonstrate that AB-QTL analysis is capable of (1) successfully uncovering positive alleles in wild germplasm that were not obvious based on the phenotype of the parent (2) offering an estimation of the breeding value of exotic germplasm, (3) generating near isogenic lines that can be used as the basis for gene isolation and also as parents for further crossing in a variety development program and (4) providing gene-based markers for targeted introgression of alleles using marker-assisted-selection (MAS). Knowledge gained from studies examining the population structure and evolutionary history of rice is helping to illuminate a long-term strategy for exploiting and simultaneously preserving the well-partitioned gene pools in rice.

Susan R. McCouch;Megan Sweeney;Jiming Li;Hui Jiang;Michael Thomson;Endang Septiningsih;Jeremy Edwards;Pilar Moncada;Jinhua Xiao;Amanda Garris;Tom Tai;Cesar Martinez;Joe Tohme;M. Sugiono;Anna McClung;隆平 袁;Sang Nag Ahn

Euphytica

2007-4